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Three GoMapMan applications:
Tutorials on YouTube
Small RNA Ontology
Select an organism
Currently only available for potato.
- Potato (Solanum tuberosum): Known potato miRNAs (miRBase V21), novel miRNAs and secondary siRNAs of potato, placed into the ontology via their target genes, identified in silico and by degradome sequencing. (doi.org/10.3389/fpls.2017.02192)
Browse bins
Open sub-bins by clicking on the selected bin. Opened bins are shown as opened and closed as closed folders (see Legend below). Ortholog groups are presented by a white icon, and genes by green (those belonging to orthologs) or purple icons (those not belonging to orthologs).
sRNA
Ontology bin - opened
Ontology bin - closed
Select a sRNA on it and sRNA Details view will open.
sRNA Details View
In this view information on the individual sRNAs including annotations and links to other sources are listed.
- Identifier, with link to the primary database
- Plant: NCBI taxa page
- Description: N/A
- Short Name: N/A
- Synonym: N/A
- Genomic Context: N/A
- Source of the sRNA
- Last modified: date of last modification of the sRNA
- Ontology annotations: bin(s) that the respective sRNA targets belong to; click to view the bin in the ontology tree
- Orthologs: N/A
- Microarray features: N/A
- Annotations: N/A
Search
Search is enabled for sRNA identifiers (names).
Exports
Ontology exports of sRNA for individual species are available for import to:
There also generic exports available, generally linking one identifier to another.
Curation
sRNA position editing is not possible.